Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs12935859 chr17:50303719 A/G 3.24E-5 178 26.57 27.2 14.43 KM Plot
PCPG rs12936283 chr17:50290955 C/T 3.32E-5 178 27.27 25.97 14.43 KM Plot
PCPG rs12936458 chr17:50312701 C/T 6.48E-5 177 25.4 28.47 14.47 KM Plot
PCPG rs12936870 chr17:50314078 C/T 6.48E-5 177 25.4 28.47 14.47 KM Plot
PCPG rs12937096 chr17:50298441 A/C 5.9E-5 178 14.47 28.38 25.4 KM Plot
PCPG rs12937717 chr17:50314350 C/T 6.48E-5 177 25.4 28.47 14.47 KM Plot
PCPG rs12939066 chr17:50270268 C/T 4.36E-5 174 25.53 29.7 14.43 KM Plot
PCPG rs12939544 chr17:50309626 G/T 5.95E-5 178 25.53 28.47 14.47 KM Plot
PCPG rs12942881 chr17:50303770 A/G 6.47E-5 177 25.53 28.38 14.47 KM Plot
PCPG rs12949235 chr17:50309871 A/C 5.96E-5 178 14.47 29.7 25.4 KM Plot
PCPG rs12950144 chr17:50308600 A/G 6.17E-5 177 25.53 29.7 14.47 KM Plot
PCPG rs12950394 chr17:50308625 A/G 6.17E-5 177 25.53 29.7 14.47 KM Plot
PCPG rs12971120 chr18:72174023 A/G 2.83E-6 178 24.7 28.83 10.3 KM Plot
PCPG rs12975912 chr19:31572062 A/G 1.22E-7 175 24.37 35.23 19.87 KM Plot
PCPG rs12988275 chr2:24346518 C/A 0.000123 176 25.28 26.92 17.43 KM Plot